minor changes, added the analysis section in the skeleton

Erwan Motte
1 parent 60bc02a0
Showing 13 changed files with 68 additions and 53 deletions Show diff stats
source/ANA/ANA_index.rst
source/FWD/FWD_index.rst
source/FWD/index.rst
source/GTD/GTD_2015.rst
source/GTD/GTD_data_format.rst
source/INS/INS_index.rst
source/INS/index.rst
source/INV/INV_index.rst
source/INV/index.rst
source/VAL/VAL_index.rst
source/VAL/index.rst
source/blocks.rst
source/index.rst
@@ -0,0 +1,4 @@
+********************
+Data Analysis
+********************
+
@@ -0,0 +1,4 @@
+*************
+Forward Model
+*************
+
@@ -1,4 +0,0 @@
-*************
-Forward Model
-*************
-
@@ -56,8 +56,13 @@ Lamasquère
  
 Auch
 ----
+-
  
-- General Map
+- General Information
+
+ - Soil type: Silty Clay (Clay: 50%, Silt: 40%, Sand: 10%)
+
+ - Localisation of plots
  
 .. figure:: /img/auch.png
    :align: center
@@ -77,7 +82,7 @@ Auch
 +--------------------+---------------+-----------------+
 | Soulès 3           | auch_sou_3    | Wheat           |
 +--------------------+---------------+-----------------+
-| Soulès 4           | auch_sou_4    | Wheat or Sunfl ?|
+| Soulès 4           | auch_sou_4    | Wheat           |
 +--------------------+---------------+-----------------+
 | Soulès 5           | auch_sou_5    | Wheat           |
 +--------------------+---------------+-----------------+
@@ -87,8 +92,6 @@ Auch
 +--------------------+---------------+-----------------+
 | Station Meteo 2    | auch_met_2    | Sunflower       |
 +--------------------+---------------+-----------------+
-| Station Meteo 3    | auch_met_3    | Soybean         |
-+--------------------+---------------+-----------------+
 | Sanchez 1          | auch_san_1    | Rapeseed        |
 +--------------------+---------------+-----------------+
  
@@ -110,19 +113,19 @@ Marcheprime
 +--------------------+---------------+-----------------+
 | Plot name          | short name    | Crop Type       |
 +====================+===============+=================+
-| C6_PdT             | mar_C06_pdt   | Potato          |
+| C6_PdT             | mar_c06_pdt   | Potato          |
 +--------------------+---------------+-----------------+
-| C6 MD              | mar_C06_md    | Sweet Corn      |
+| C6 MD              | mar_c06_md    | Sweet Corn      |
 +--------------------+---------------+-----------------+
-| C7 MS              | mar_C07_ms    | Seed Corn       |
+| C7 MS              | mar_c07_ms    | Seed Corn       |
 +--------------------+---------------+-----------------+
-| C7 PdT             | mar_C07_pdt   | Potato          |
+| C7 PdT             | mar_c07_pdt   | Potato          |
 +--------------------+---------------+-----------------+
-| C8 HV              | mar_C08_hv    | Green Bean      |
+| C8 HV              | mar_c08_hv    | Green Bean      |
 +--------------------+---------------+-----------------+
-| C8 MC              | mar_C08_mc    | Grain Corn      |
+| C8 MC              | mar_c08_mc    | Grain Corn      |
 +--------------------+---------------+-----------------+
-| C9 C               | mar_C09_c     | Carrot          |
+| C9 C               | mar_c09_c     | Carrot          |
 +--------------------+---------------+-----------------+
 | C9 MD              | mar_c09_md    | Sweet Corn      |
 +--------------------+---------------+-----------------+
@@ -11,8 +11,8 @@ They are managed using GIS software such as the freely available QGIS_.
 The following fields were selected in order to build a unified ground truth
  database:
  
-Soil
-----
+Soil meta data
+--------------
  
 Values related to soil structure and considered as constant
 for the whole duration of the campaign:
@@ -51,7 +51,7 @@ duration of the campaign:
 +------------------------------+--------+-----------+
  
  
-Plot shape
+Geometry
 ----------
  
 The plot shape field is shapefile_ polygon defined as a series of x/y
@@ -70,8 +70,8 @@ is Lambert 93
 +------------------------------+--------+-----------+
  
  
-Soil Moisture
--------------
+Soil moisture measurements
+--------------------------
  
 Values related to soil moisture are stored for each flight date.
 For flights spanning over two days, the date of the second day is given.
@@ -79,14 +79,14 @@ For flights spanning over two days, the date of the second day is given.
 +----------------------------------+---------+---------------+
 | Parameter                        | unit    | variable      |
 +==================================+=========+===============+
-| Mean volumetric soil moisture    | [m3/m3] | SM_avg_[MMDD] |
+| Mean volumetric soil moisture    | [m3/m3] | sm_avg_[MMDD] |
 +----------------------------------+---------+---------------+
-| Std dev volumetric soil moisture | [m3/m3] | SM_std_[MMDD] |
+| Std dev volumetric soil moisture | [m3/m3] | sm_std_[MMDD] |
 +----------------------------------+---------+---------------+
  
  
-Vegetation
-----------
+Vegetation measurements
+-----------------------
  
 Values related to vegetation cover for each flight date
  
@@ -99,7 +99,7 @@ Values related to vegetation cover for each flight date
 +------------------------------+---------+-----------------+
 | Vegetation Water Content     | [kg/m2] | crop_VWC_[MMDD] |
 +------------------------------+---------+-----------------+
-| Vegetation Relative Humidity | [%]     | crop_VRH_[MMDD] |
+| Vegetation Relative Humidity | [%]     | crop_rh_[MMDD]  |
 +------------------------------+---------+-----------------+
  
  
@@ -0,0 +1,18 @@
+.. _Instrument:
+
+********************
+The Glori Instrument
+********************
+
+
+
+.. toctree::
+   :maxdepth: 2
+
+   INS_intro
+   INS_antennas
+   INS_calib
+   INS_frontend
+   INS_backend
+   INS_ancillary
+   INS_data_format
 \ No newline at end of file
@@ -1,14 +0,0 @@
-********************
-The Glori Instrument
-********************
-
-.. toctree::
-   :maxdepth: 2
-
-   INS_intro
-   INS_antennas
-   INS_calib
-   INS_frontend
-   INS_backend
-   INS_ancillary
-   INS_data_format
 \ No newline at end of file
@@ -0,0 +1,5 @@
+*******************
+Inversion
+*******************
+
+No inversion subsystem available yet
 \ No newline at end of file
@@ -1,5 +0,0 @@
-*******************
-Inversion
-*******************
-
-No inversion subsystem available yet
 \ No newline at end of file
@@ -0,0 +1,4 @@
+********************
+Validation
+********************
+
@@ -1,4 +0,0 @@
-********************
-Validation
-********************
-
@@ -9,7 +9,7 @@ We are here describing the organization of the GLORI documentation, linked to th
 architecture of the project, not of the instrument itself. The following
 blocks where identified:
  
-- **Instrument (INS)**: Technical description of the instrument itself,
+- :ref:`Instrument` **(INS)**: Technical description of the instrument itself,
   interfaces with the plane, and all the way to raw data and ancillary
   data storage.
  
@@ -21,6 +21,9 @@ blocks where identified:
  
 - **Forward Model (FWD)**: Model used to compute expected
   apparent reflectivity from geometrical configuration and surface parameters.
+
+- **Analysis routines (ANA)**: Routines used to explore and analyse
+  measurements.
  
 - **Validation routines (VAL)**: Routines used to validate processed data
   versus modeled data.
@@ -13,12 +13,13 @@ Contents:
  
    intro
    blocks
-   INS/index
+   INS/INS_index
    PRO/PRO_index
    GTD/GTD_index
-   FWD/index
-   VAL/index
-   INV/index
+   FWD/FWD_index
+   ANA/ANA_index
+   VAL/VAL_index
+   INV/INV_index
...	...	@@ -0,0 +1,4 @@
	1	+********************
	2	+Data Analysis
	3	+********************
	4	+
...	...
...	...	@@ -0,0 +1,4 @@
	1	+*************
	2	+Forward Model
	3	+*************
	4	+
...	...
...	...	@@ -1,4 +0,0 @@
1		-*************
2		-Forward Model
3		-*************
4		-
...	...	@@ -56,8 +56,13 @@ Lamasquère
56	56
57	57	Auch
58	58	----
	59	+-
59	60
60		-- General Map
	61	+- General Information
	62	+
	63	+ - Soil type: Silty Clay (Clay: 50%, Silt: 40%, Sand: 10%)
	64	+
	65	+ - Localisation of plots
61	66
62	67	.. figure:: /img/auch.png
63	68	:align: center
...	...	@@ -77,7 +82,7 @@ Auch
77	82	+--------------------+---------------+-----------------+
78	83	\| Soulès 3 \| auch_sou_3 \| Wheat \|
79	84	+--------------------+---------------+-----------------+
80		-\| Soulès 4 \| auch_sou_4 \| Wheat or Sunfl ?\|
	85	+\| Soulès 4 \| auch_sou_4 \| Wheat \|
81	86	+--------------------+---------------+-----------------+
82	87	\| Soulès 5 \| auch_sou_5 \| Wheat \|
83	88	+--------------------+---------------+-----------------+
...	...	@@ -87,8 +92,6 @@ Auch
87	92	+--------------------+---------------+-----------------+
88	93	\| Station Meteo 2 \| auch_met_2 \| Sunflower \|
89	94	+--------------------+---------------+-----------------+
90		-\| Station Meteo 3 \| auch_met_3 \| Soybean \|
91		-+--------------------+---------------+-----------------+
92	95	\| Sanchez 1 \| auch_san_1 \| Rapeseed \|
93	96	+--------------------+---------------+-----------------+
94	97
...	...	@@ -110,19 +113,19 @@ Marcheprime
110	113	+--------------------+---------------+-----------------+
111	114	\| Plot name \| short name \| Crop Type \|
112	115	+====================+===============+=================+
113		-\| C6_PdT \| mar_C06_pdt \| Potato \|
	116	+\| C6_PdT \| mar_c06_pdt \| Potato \|
114	117	+--------------------+---------------+-----------------+
115		-\| C6 MD \| mar_C06_md \| Sweet Corn \|
	118	+\| C6 MD \| mar_c06_md \| Sweet Corn \|
116	119	+--------------------+---------------+-----------------+
117		-\| C7 MS \| mar_C07_ms \| Seed Corn \|
	120	+\| C7 MS \| mar_c07_ms \| Seed Corn \|
118	121	+--------------------+---------------+-----------------+
119		-\| C7 PdT \| mar_C07_pdt \| Potato \|
	122	+\| C7 PdT \| mar_c07_pdt \| Potato \|
120	123	+--------------------+---------------+-----------------+
121		-\| C8 HV \| mar_C08_hv \| Green Bean \|
	124	+\| C8 HV \| mar_c08_hv \| Green Bean \|
122	125	+--------------------+---------------+-----------------+
123		-\| C8 MC \| mar_C08_mc \| Grain Corn \|
	126	+\| C8 MC \| mar_c08_mc \| Grain Corn \|
124	127	+--------------------+---------------+-----------------+
125		-\| C9 C \| mar_C09_c \| Carrot \|
	128	+\| C9 C \| mar_c09_c \| Carrot \|
126	129	+--------------------+---------------+-----------------+
127	130	\| C9 MD \| mar_c09_md \| Sweet Corn \|
128	131	+--------------------+---------------+-----------------+
...	...
...	...	@@ -11,8 +11,8 @@ They are managed using GIS software such as the freely available QGIS_.
11	11	The following fields were selected in order to build a unified ground truth
12	12	database:
13	13
14		-Soil
15		-----
	14	+Soil meta data
	15	+--------------
16	16
17	17	Values related to soil structure and considered as constant
18	18	for the whole duration of the campaign:
...	...	@@ -51,7 +51,7 @@ duration of the campaign:
51	51	+------------------------------+--------+-----------+
52	52
53	53
54		-Plot shape
	54	+Geometry
55	55	----------
56	56
57	57	The plot shape field is shapefile_ polygon defined as a series of x/y
...	...	@@ -70,8 +70,8 @@ is Lambert 93
70	70	+------------------------------+--------+-----------+
71	71
72	72
73		-Soil Moisture
74		--------------
	73	+Soil moisture measurements
	74	+--------------------------
75	75
76	76	Values related to soil moisture are stored for each flight date.
77	77	For flights spanning over two days, the date of the second day is given.
...	...	@@ -79,14 +79,14 @@ For flights spanning over two days, the date of the second day is given.
79	79	+----------------------------------+---------+---------------+
80	80	\| Parameter \| unit \| variable \|
81	81	+==================================+=========+===============+
82		-\| Mean volumetric soil moisture \| [m3/m3] \| SM_avg_[MMDD] \|
	82	+\| Mean volumetric soil moisture \| [m3/m3] \| sm_avg_[MMDD] \|
83	83	+----------------------------------+---------+---------------+
84		-\| Std dev volumetric soil moisture \| [m3/m3] \| SM_std_[MMDD] \|
	84	+\| Std dev volumetric soil moisture \| [m3/m3] \| sm_std_[MMDD] \|
85	85	+----------------------------------+---------+---------------+
86	86
87	87
88		-Vegetation
89		-----------
	88	+Vegetation measurements
	89	+-----------------------
90	90
91	91	Values related to vegetation cover for each flight date
92	92
...	...	@@ -99,7 +99,7 @@ Values related to vegetation cover for each flight date
99	99	+------------------------------+---------+-----------------+
100	100	\| Vegetation Water Content \| [kg/m2] \| crop_VWC_[MMDD] \|
101	101	+------------------------------+---------+-----------------+
102		-\| Vegetation Relative Humidity \| [%] \| crop_VRH_[MMDD] \|
	102	+\| Vegetation Relative Humidity \| [%] \| crop_rh_[MMDD] \|
103	103	+------------------------------+---------+-----------------+
104	104
105	105
...	...
...	...	@@ -0,0 +1,18 @@
	1	+.. _Instrument:
	2	+
	3	+********************
	4	+The Glori Instrument
	5	+********************
	6	+
	7	+
	8	+
	9	+.. toctree::
	10	+ :maxdepth: 2
	11	+
	12	+ INS_intro
	13	+ INS_antennas
	14	+ INS_calib
	15	+ INS_frontend
	16	+ INS_backend
	17	+ INS_ancillary
	18	+ INS_data_format
0	19	\ No newline at end of file
...	...
...	...	@@ -1,14 +0,0 @@
1		-********************
2		-The Glori Instrument
3		-********************
4		-
5		-.. toctree::
6		- :maxdepth: 2
7		-
8		- INS_intro
9		- INS_antennas
10		- INS_calib
11		- INS_frontend
12		- INS_backend
13		- INS_ancillary
14		- INS_data_format
15	0	\ No newline at end of file
...	...	@@ -0,0 +1,5 @@
	1	+*******************
	2	+Inversion
	3	+*******************
	4	+
	5	+No inversion subsystem available yet
0	6	\ No newline at end of file
...	...
...	...	@@ -1,5 +0,0 @@
1		-*******************
2		-Inversion
3		-*******************
4		-
5		-No inversion subsystem available yet
6	0	\ No newline at end of file
...	...	@@ -0,0 +1,4 @@
	1	+********************
	2	+Validation
	3	+********************
	4	+
...	...