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INS/index.md
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| 1 | -Index of GLORI INS Subsystem Documentation | |
| 2 | -========================================== | |
| 3 | - | |
| 4 | -*pour la documentation en français, cliquer ici* | |
| 5 | - | |
| 6 | -Test insertion png | |
| 7 | - | |
| 8 | -Test insertion SVG | |
| 9 | - | |
| 10 | - | |
| 11 | -Test link interne | |
| 12 | - | |
| 13 | -Test link externe | |
| 14 | 0 | \ No newline at end of file |
img/image3_new.png
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img/spyder_light.svg
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index.md
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| 1 | -Index of GLORI Documentation | |
| 2 | -============================ | |
| 3 | - | |
| 4 | -*pour la documentation en français, cliquer [ici](index_fr.md)* | |
| 5 | - | |
| 6 | -Test insertion png | |
| 7 | - | |
| 8 | - | |
| 9 | - | |
| 10 | -Test insertion SVG | |
| 11 | - | |
| 12 | - | |
| 13 | - | |
| 14 | - | |
| 15 | - | |
| 16 | - | |
| 17 | -Test link interne | |
| 18 | - | |
| 19 | -[INS Subsystem documentation](INS/index.md) | |
| 20 | - | |
| 21 | -Test link externe | |
| 22 | - | |
| 23 | -[google.com](http://www.google.com) | |
| 24 | 0 | \ No newline at end of file |
| ... | ... | @@ -0,0 +1,48 @@ |
| 1 | +********************* | |
| 2 | +Campaigns Description | |
| 3 | +********************* | |
| 4 | + | |
| 5 | + | |
| 6 | +GLORI 2014 Campaign | |
| 7 | +=================== | |
| 8 | + | |
| 9 | + | |
| 10 | + | |
| 11 | + | |
| 12 | +GLORIE 2015 Campaign | |
| 13 | +==================== | |
| 14 | + | |
| 15 | +The in situ data of the GLORIE 2015 Campaign was collected in different ways | |
| 16 | +according to the sites. The following sections describe the methods and | |
| 17 | +available data for each of the sites. | |
| 18 | + | |
| 19 | +.. figure:: /img/zones.png | |
| 20 | + :align: center | |
| 21 | + :alt: | |
| 22 | + | |
| 23 | + Description of the GLORIE 2015 zones (build from qgis) | |
| 24 | + | |
| 25 | + | |
| 26 | +Lamasquère | |
| 27 | +---------- | |
| 28 | + | |
| 29 | +The Lamasquère area | |
| 30 | + | |
| 31 | +.. figure:: /img/lamasquere.png | |
| 32 | + :align: center | |
| 33 | + :alt: | |
| 34 | + | |
| 35 | + Description of the Lamasquère area (build from qgis) | |
| 36 | + | |
| 37 | + | |
| 38 | +Auch | |
| 39 | +---- | |
| 40 | + | |
| 41 | + | |
| 42 | + | |
| 43 | +Marcheprime | |
| 44 | +----------- | |
| 45 | + | |
| 46 | + | |
| 47 | +Nezer | |
| 48 | +----- | |
| 0 | 49 | \ No newline at end of file | ... | ... |
| ... | ... | @@ -0,0 +1,121 @@ |
| 1 | +Ground Truth data format | |
| 2 | +======================== | |
| 3 | + | |
| 4 | +The ground truth is stored in the [campaign]_gt shapefile_. | |
| 5 | +The polygon delimiting the plots can either be given by partners | |
| 6 | +or created by geo-interpretation of *correctly geo-referenced* satellite data. | |
| 7 | +They are managed using GIS software such as the freely available QGIS_. | |
| 8 | + | |
| 9 | +.. _QGIS: http://www.qgis.org/ | |
| 10 | + | |
| 11 | +The following fields were selected in order to build a unified ground truth | |
| 12 | + database: | |
| 13 | + | |
| 14 | +Soil | |
| 15 | +---- | |
| 16 | + | |
| 17 | +Values related to soil structure and considered as constant | |
| 18 | +for the whole duration of the campaign: | |
| 19 | + | |
| 20 | ++------------------------------+------+-----------+ | |
| 21 | +| Parameter | unit | variable | | |
| 22 | ++==============================+======+===========+ | |
| 23 | +| Roughness Standard deviation | [m] | rough_std | | |
| 24 | ++------------------------------+------+-----------+ | |
| 25 | +| Roughness Correlation length | [m] | rough_L | | |
| 26 | ++------------------------------+------+-----------+ | |
| 27 | +| Soil Sand content | [%] | soil_sand | | |
| 28 | ++------------------------------+------+-----------+ | |
| 29 | +| Soil Silt content | [%] | soil_silt | | |
| 30 | ++------------------------------+------+-----------+ | |
| 31 | +| Soil Clay content | [%] | soil_clay | | |
| 32 | ++------------------------------+------+-----------+ | |
| 33 | + | |
| 34 | + | |
| 35 | +Crop meta data | |
| 36 | +-------------- | |
| 37 | + | |
| 38 | +Values related to crops and considered as constant for the whole | |
| 39 | +duration of the campaign: | |
| 40 | + | |
| 41 | ++------------------------------+--------+-----------+ | |
| 42 | +| Parameter | unit | variable | | |
| 43 | ++==============================+========+===========+ | |
| 44 | +| Crop Type | [N/A] | crop_type | | |
| 45 | ++------------------------------+--------+-----------+ | |
| 46 | +| Seeding date | [date] | date_seed | | |
| 47 | ++------------------------------+--------+-----------+ | |
| 48 | +| Harvest date | [date] | date_harv | | |
| 49 | ++------------------------------+--------+-----------+ | |
| 50 | +| Irrigated | [Y/N] | if_irrig | | |
| 51 | ++------------------------------+--------+-----------+ | |
| 52 | + | |
| 53 | + | |
| 54 | +Plot shape | |
| 55 | +---------- | |
| 56 | + | |
| 57 | +The plot shape field is shapefile_ polygon defined as a series of x/y | |
| 58 | +coordinates representing a closed geometry. The reference system to be used | |
| 59 | +is Lambert 93 | |
| 60 | +(`EPSG 2154`_) | |
| 61 | + | |
| 62 | +.. _`EPSG 2154`: http://spatialreference.org/ref/epsg/rgf93-lambert-93/ | |
| 63 | + | |
| 64 | +.. _shapefile: https://en.wikipedia.org/wiki/Shapefile | |
| 65 | + | |
| 66 | ++------------------------------+--------+-----------+ | |
| 67 | +| Parameter | unit | variable | | |
| 68 | ++==============================+========+===========+ | |
| 69 | +| Plot shape | shp | geometry | | |
| 70 | ++------------------------------+--------+-----------+ | |
| 71 | + | |
| 72 | + | |
| 73 | +Soil Moisture | |
| 74 | +------------- | |
| 75 | + | |
| 76 | +Values related to soil moisture are stored for each flight date. | |
| 77 | +For flights spanning over two days, the date of the second day is given. | |
| 78 | + | |
| 79 | ++----------------------------------+---------+---------------+ | |
| 80 | +| Parameter | unit | variable | | |
| 81 | ++==================================+=========+===============+ | |
| 82 | +| Mean volumetric soil moisture | [m3/m3] | SM_avg_[MMDD] | | |
| 83 | ++----------------------------------+---------+---------------+ | |
| 84 | +| Std dev volumetric soil moisture | [m3/m3] | SM_std_[MMDD] | | |
| 85 | ++----------------------------------+---------+---------------+ | |
| 86 | + | |
| 87 | + | |
| 88 | +Vegetation | |
| 89 | +---------- | |
| 90 | + | |
| 91 | +Values related to vegetation cover for each flight date | |
| 92 | + | |
| 93 | ++------------------------------+---------+-----------------+ | |
| 94 | +| Parameter | unit | variable | | |
| 95 | ++==============================+=========+=================+ | |
| 96 | +| Leaf Area Index | [m2/m2] | crop_LAI_[MMDD] | | |
| 97 | ++------------------------------+---------+-----------------+ | |
| 98 | +| Crop height | [m] | crop_h_[MMDD] | | |
| 99 | ++------------------------------+---------+-----------------+ | |
| 100 | +| Vegetation Water Content | [kg/m2] | crop_VWC_[MMDD] | | |
| 101 | ++------------------------------+---------+-----------------+ | |
| 102 | +| Vegetation Relative Humidity | [%] | crop_VRH_[MMDD] | | |
| 103 | ++------------------------------+---------+-----------------+ | |
| 104 | + | |
| 105 | + | |
| 106 | + | |
| 107 | +Biomass | |
| 108 | +------- | |
| 109 | + | |
| 110 | +Values related to biomass description. Considered as constant for the whole | |
| 111 | +campaign duration. | |
| 112 | + | |
| 113 | ++------------------------------+---------+-----------------+ | |
| 114 | +| Parameter | unit | variable | | |
| 115 | ++==============================+=========+=================+ | |
| 116 | +| Biomass Density | [t/ha] | biom_dens | | |
| 117 | ++------------------------------+---------+-----------------+ | |
| 118 | +| Biomass height | [m] | biom_h | | |
| 119 | ++------------------------------+---------+-----------------+ | |
| 120 | +| Stand plantation year | [year] | biom_year | | |
| 121 | ++------------------------------+---------+-----------------+ | ... | ... |
| ... | ... | @@ -0,0 +1,27 @@ |
| 1 | +Definition of GLORI'S Subsystems | |
| 2 | +******************************** | |
| 3 | + | |
| 4 | +Test png | |
| 5 | +======== | |
| 6 | + | |
| 7 | +.. figure:: /img/image3_new.png | |
| 8 | + :align: center | |
| 9 | + | |
| 10 | + test png | |
| 11 | + | |
| 12 | +Test svg | |
| 13 | +======== | |
| 14 | + | |
| 15 | +.. figure:: /img/spyder_light.svg | |
| 16 | + :align: center | |
| 17 | + | |
| 18 | + test svg | |
| 19 | + | |
| 20 | +Test lien interne | |
| 21 | +================= | |
| 22 | + | |
| 23 | + | |
| 24 | + | |
| 25 | + | |
| 26 | +Test lien externe | |
| 27 | +================= | ... | ... |
| ... | ... | @@ -0,0 +1,368 @@ |
| 1 | +# -*- coding: utf-8 -*- | |
| 2 | +# | |
| 3 | +# GLORI_doc documentation build configuration file, created by | |
| 4 | +# sphinx-quickstart on Mon May 30 11:28:04 2016. | |
| 5 | +# | |
| 6 | +# This file is execfile()d with the current directory set to its | |
| 7 | +# containing dir. | |
| 8 | +# | |
| 9 | +# Note that not all possible configuration values are present in this | |
| 10 | +# autogenerated file. | |
| 11 | +# | |
| 12 | +# All configuration values have a default; values that are commented out | |
| 13 | +# serve to show the default. | |
| 14 | + | |
| 15 | +import sys | |
| 16 | +import os | |
| 17 | + | |
| 18 | +# If extensions (or modules to document with autodoc) are in another directory, | |
| 19 | +# add these directories to sys.path here. If the directory is relative to the | |
| 20 | +# documentation root, use os.path.abspath to make it absolute, like shown here. | |
| 21 | +#sys.path.insert(0, os.path.abspath('.')) | |
| 22 | + | |
| 23 | +# -- General configuration ------------------------------------------------ | |
| 24 | + | |
| 25 | +# If your documentation needs a minimal Sphinx version, state it here. | |
| 26 | +#needs_sphinx = '1.0' | |
| 27 | + | |
| 28 | +# Add any Sphinx extension module names here, as strings. They can be | |
| 29 | +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom | |
| 30 | +# ones. | |
| 31 | +extensions = [ | |
| 32 | + 'sphinx.ext.autodoc', | |
| 33 | + 'sphinx.ext.doctest', | |
| 34 | + 'sphinx.ext.intersphinx', | |
| 35 | + 'sphinx.ext.todo', | |
| 36 | + 'sphinx.ext.coverage', | |
| 37 | + 'sphinx.ext.mathjax', | |
| 38 | + 'sphinx.ext.ifconfig', | |
| 39 | + 'rst2pdf.pdfbuilder', | |
| 40 | +] | |
| 41 | + | |
| 42 | +# Add any paths that contain templates here, relative to this directory. | |
| 43 | +templates_path = ['_templates'] | |
| 44 | + | |
| 45 | +# The suffix(es) of source filenames. | |
| 46 | +# You can specify multiple suffix as a list of string: | |
| 47 | +# source_suffix = ['.rst', '.md'] | |
| 48 | +source_suffix = '.rst' | |
| 49 | + | |
| 50 | +# The encoding of source files. | |
| 51 | +#source_encoding = 'utf-8-sig' | |
| 52 | + | |
| 53 | +# The master toctree document. | |
| 54 | +master_doc = 'index' | |
| 55 | + | |
| 56 | +# General information about the project. | |
| 57 | +project = u'GLORI_doc' | |
| 58 | +copyright = u'2016, Erwan Motte' | |
| 59 | +author = u'Erwan Motte' | |
| 60 | + | |
| 61 | +# The version info for the project you're documenting, acts as replacement for | |
| 62 | +# |version| and |release|, also used in various other places throughout the | |
| 63 | +# built documents. | |
| 64 | +# | |
| 65 | +# The short X.Y version. | |
| 66 | +version = u'1.0' | |
| 67 | +# The full version, including alpha/beta/rc tags. | |
| 68 | +release = u'1.0' | |
| 69 | + | |
| 70 | +# The language for content autogenerated by Sphinx. Refer to documentation | |
| 71 | +# for a list of supported languages. | |
| 72 | +# | |
| 73 | +# This is also used if you do content translation via gettext catalogs. | |
| 74 | +# Usually you set "language" from the command line for these cases. | |
| 75 | +language = None | |
| 76 | + | |
| 77 | +# There are two options for replacing |today|: either, you set today to some | |
| 78 | +# non-false value, then it is used: | |
| 79 | +#today = '' | |
| 80 | +# Else, today_fmt is used as the format for a strftime call. | |
| 81 | +#today_fmt = '%B %d, %Y' | |
| 82 | + | |
| 83 | +# List of patterns, relative to source directory, that match files and | |
| 84 | +# directories to ignore when looking for source files. | |
| 85 | +exclude_patterns = [] | |
| 86 | + | |
| 87 | +# The reST default role (used for this markup: `text`) to use for all | |
| 88 | +# documents. | |
| 89 | +#default_role = None | |
| 90 | + | |
| 91 | +# If true, '()' will be appended to :func: etc. cross-reference text. | |
| 92 | +#add_function_parentheses = True | |
| 93 | + | |
| 94 | +# If true, the current module name will be prepended to all description | |
| 95 | +# unit titles (such as .. function::). | |
| 96 | +#add_module_names = True | |
| 97 | + | |
| 98 | +# If true, sectionauthor and moduleauthor directives will be shown in the | |
| 99 | +# output. They are ignored by default. | |
| 100 | +#show_authors = False | |
| 101 | + | |
| 102 | +# The name of the Pygments (syntax highlighting) style to use. | |
| 103 | +pygments_style = 'sphinx' | |
| 104 | + | |
| 105 | +# A list of ignored prefixes for module index sorting. | |
| 106 | +#modindex_common_prefix = [] | |
| 107 | + | |
| 108 | +# If true, keep warnings as "system message" paragraphs in the built documents. | |
| 109 | +#keep_warnings = False | |
| 110 | + | |
| 111 | +# If true, `todo` and `todoList` produce output, else they produce nothing. | |
| 112 | +todo_include_todos = True | |
| 113 | + | |
| 114 | + | |
| 115 | +# -- Options for HTML output ---------------------------------------------- | |
| 116 | + | |
| 117 | +# The theme to use for HTML and HTML Help pages. See the documentation for | |
| 118 | +# a list of builtin themes. | |
| 119 | +html_theme = 'alabaster' | |
| 120 | + | |
| 121 | +# Theme options are theme-specific and customize the look and feel of a theme | |
| 122 | +# further. For a list of options available for each theme, see the | |
| 123 | +# documentation. | |
| 124 | +#html_theme_options = {} | |
| 125 | + | |
| 126 | +# Add any paths that contain custom themes here, relative to this directory. | |
| 127 | +#html_theme_path = [] | |
| 128 | + | |
| 129 | +# The name for this set of Sphinx documents. If None, it defaults to | |
| 130 | +# "<project> v<release> documentation". | |
| 131 | +#html_title = None | |
| 132 | + | |
| 133 | +# A shorter title for the navigation bar. Default is the same as html_title. | |
| 134 | +#html_short_title = None | |
| 135 | + | |
| 136 | +# The name of an image file (relative to this directory) to place at the top | |
| 137 | +# of the sidebar. | |
| 138 | +#html_logo = None | |
| 139 | + | |
| 140 | +# The name of an image file (within the static path) to use as favicon of the | |
| 141 | +# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 | |
| 142 | +# pixels large. | |
| 143 | +#html_favicon = None | |
| 144 | + | |
| 145 | +# Add any paths that contain custom static files (such as style sheets) here, | |
| 146 | +# relative to this directory. They are copied after the builtin static files, | |
| 147 | +# so a file named "default.css" will overwrite the builtin "default.css". | |
| 148 | +html_static_path = ['_static'] | |
| 149 | + | |
| 150 | +# Add any extra paths that contain custom files (such as robots.txt or | |
| 151 | +# .htaccess) here, relative to this directory. These files are copied | |
| 152 | +# directly to the root of the documentation. | |
| 153 | +#html_extra_path = [] | |
| 154 | + | |
| 155 | +# If not '', a 'Last updated on:' timestamp is inserted at every page bottom, | |
| 156 | +# using the given strftime format. | |
| 157 | +#html_last_updated_fmt = '%b %d, %Y' | |
| 158 | + | |
| 159 | +# If true, SmartyPants will be used to convert quotes and dashes to | |
| 160 | +# typographically correct entities. | |
| 161 | +#html_use_smartypants = True | |
| 162 | + | |
| 163 | +# Custom sidebar templates, maps document names to template names. | |
| 164 | +#html_sidebars = {} | |
| 165 | + | |
| 166 | +# Additional templates that should be rendered to pages, maps page names to | |
| 167 | +# template names. | |
| 168 | +#html_additional_pages = {} | |
| 169 | + | |
| 170 | +# If false, no module index is generated. | |
| 171 | +#html_domain_indices = True | |
| 172 | + | |
| 173 | +# If false, no index is generated. | |
| 174 | +#html_use_index = True | |
| 175 | + | |
| 176 | +# If true, the index is split into individual pages for each letter. | |
| 177 | +#html_split_index = False | |
| 178 | + | |
| 179 | +# If true, links to the reST sources are added to the pages. | |
| 180 | +#html_show_sourcelink = True | |
| 181 | + | |
| 182 | +# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. | |
| 183 | +#html_show_sphinx = True | |
| 184 | + | |
| 185 | +# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. | |
| 186 | +#html_show_copyright = True | |
| 187 | + | |
| 188 | +# If true, an OpenSearch description file will be output, and all pages will | |
| 189 | +# contain a <link> tag referring to it. The value of this option must be the | |
| 190 | +# base URL from which the finished HTML is served. | |
| 191 | +#html_use_opensearch = '' | |
| 192 | + | |
| 193 | +# This is the file name suffix for HTML files (e.g. ".xhtml"). | |
| 194 | +#html_file_suffix = None | |
| 195 | + | |
| 196 | +# Language to be used for generating the HTML full-text search index. | |
| 197 | +# Sphinx supports the following languages: | |
| 198 | +# 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' | |
| 199 | +# 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr' | |
| 200 | +#html_search_language = 'en' | |
| 201 | + | |
| 202 | +# A dictionary with options for the search language support, empty by default. | |
| 203 | +# Now only 'ja' uses this config value | |
| 204 | +#html_search_options = {'type': 'default'} | |
| 205 | + | |
| 206 | +# The name of a javascript file (relative to the configuration directory) that | |
| 207 | +# implements a search results scorer. If empty, the default will be used. | |
| 208 | +#html_search_scorer = 'scorer.js' | |
| 209 | + | |
| 210 | +# Output file base name for HTML help builder. | |
| 211 | +htmlhelp_basename = 'GLORI_docdoc' | |
| 212 | + | |
| 213 | +# -- Options for LaTeX output --------------------------------------------- | |
| 214 | + | |
| 215 | +latex_elements = { | |
| 216 | +# The paper size ('letterpaper' or 'a4paper'). | |
| 217 | +#'papersize': 'letterpaper', | |
| 218 | + | |
| 219 | +# The font size ('10pt', '11pt' or '12pt'). | |
| 220 | +#'pointsize': '10pt', | |
| 221 | + | |
| 222 | +# Additional stuff for the LaTeX preamble. | |
| 223 | +#'preamble': '', | |
| 224 | + | |
| 225 | +# Latex figure (float) alignment | |
| 226 | +#'figure_align': 'htbp', | |
| 227 | +} | |
| 228 | + | |
| 229 | +# Grouping the document tree into LaTeX files. List of tuples | |
| 230 | +# (source start file, target name, title, | |
| 231 | +# author, documentclass [howto, manual, or own class]). | |
| 232 | +latex_documents = [ | |
| 233 | + (master_doc, 'GLORI_doc.tex', u'GLORI\\_doc Documentation', | |
| 234 | + u'Erwan Motte', 'manual'), | |
| 235 | +] | |
| 236 | + | |
| 237 | +# The name of an image file (relative to this directory) to place at the top of | |
| 238 | +# the title page. | |
| 239 | +#latex_logo = None | |
| 240 | + | |
| 241 | +# For "manual" documents, if this is true, then toplevel headings are parts, | |
| 242 | +# not chapters. | |
| 243 | +#latex_use_parts = False | |
| 244 | + | |
| 245 | +# If true, show page references after internal links. | |
| 246 | +#latex_show_pagerefs = False | |
| 247 | + | |
| 248 | +# If true, show URL addresses after external links. | |
| 249 | +#latex_show_urls = False | |
| 250 | + | |
| 251 | +# Documents to append as an appendix to all manuals. | |
| 252 | +#latex_appendices = [] | |
| 253 | + | |
| 254 | +# If false, no module index is generated. | |
| 255 | +#latex_domain_indices = True | |
| 256 | + | |
| 257 | + | |
| 258 | +# -- Options for manual page output --------------------------------------- | |
| 259 | + | |
| 260 | +# One entry per manual page. List of tuples | |
| 261 | +# (source start file, name, description, authors, manual section). | |
| 262 | +man_pages = [ | |
| 263 | + (master_doc, 'glori_doc', u'GLORI_doc Documentation', | |
| 264 | + [author], 1) | |
| 265 | +] | |
| 266 | + | |
| 267 | +# If true, show URL addresses after external links. | |
| 268 | +#man_show_urls = False | |
| 269 | + | |
| 270 | + | |
| 271 | +# -- Options for Texinfo output ------------------------------------------- | |
| 272 | + | |
| 273 | +# Grouping the document tree into Texinfo files. List of tuples | |
| 274 | +# (source start file, target name, title, author, | |
| 275 | +# dir menu entry, description, category) | |
| 276 | +texinfo_documents = [ | |
| 277 | + (master_doc, 'GLORI_doc', u'GLORI_doc Documentation', | |
| 278 | + author, 'GLORI_doc', 'One line description of project.', | |
| 279 | + 'Miscellaneous'), | |
| 280 | +] | |
| 281 | + | |
| 282 | +# Documents to append as an appendix to all manuals. | |
| 283 | +#texinfo_appendices = [] | |
| 284 | + | |
| 285 | +# If false, no module index is generated. | |
| 286 | +#texinfo_domain_indices = True | |
| 287 | + | |
| 288 | +# How to display URL addresses: 'footnote', 'no', or 'inline'. | |
| 289 | +#texinfo_show_urls = 'footnote' | |
| 290 | + | |
| 291 | +# If true, do not generate a @detailmenu in the "Top" node's menu. | |
| 292 | +#texinfo_no_detailmenu = False | |
| 293 | + | |
| 294 | + | |
| 295 | +# -- Options for Epub output ---------------------------------------------- | |
| 296 | + | |
| 297 | +# Bibliographic Dublin Core info. | |
| 298 | +epub_title = project | |
| 299 | +epub_author = author | |
| 300 | +epub_publisher = author | |
| 301 | +epub_copyright = copyright | |
| 302 | + | |
| 303 | +# The basename for the epub file. It defaults to the project name. | |
| 304 | +#epub_basename = project | |
| 305 | + | |